PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P24090_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 400aa    MW: 42163.4 Da    PI: 6.6123
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P24090_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.3e-12209254555
                             HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  GSMUA_Achr10P24090_001 209 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 254
                             99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.41E-13202258No hitNo description
SuperFamilySSF474592.22E-16202261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39204253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-16206260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-9209254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-14210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MQPSSKEMQA MVGGLPASAV AAHIALQELQ NGGGADHDDF LDQMMSGLAP AWQMGLGGYD  60
DASLLTSRLR QHQAAGGGSP PPTGKSMLLQ LNHHHYSHHA SPQQQLLLQS MGLPPAGGGG  120
DSGGFLPLPL SLGSGGSRDS GLLFDRSREE VDAPFKSSDS TEAEALYNGL GESLQRAAQA  180
PNHHHHFPHP QSLNVPRVRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNANKTDKA  240
SMLDEIIDYV KFLQLQVKAM PLSLSLSLSL SLSLSLSLSF SCYDSIQSRG ADGAAADDGL  300
TAAENQVTKL LEEDMGSAMQ YLQGKGLCLM PISLASAISS ATCHPRPPIP GGLSQLIRRT  360
APSPHAAGDA PSSPSMSALT VQSTNGGGDA DVSRPSRCKD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213218RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0620769e-44BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds.
GenBankKJ7279389e-44KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380793.10.0PREDICTED: transcription factor bHLH82-like
TrEMBLM0RKY40.0M0RKY4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P24090_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.15e-51LJRHL1-like 1